Research Interests:

Bioinformatics (BioAlgorithms, BioProgramming); Cyber Security and Information Assurance; Artificial Intelligence (Agents, Multiagent Systems); Formal Languages (Grammars, Automata/Machines); Programming Languages; Compiler/Interpreter Design; Parallel, Distributed, High Performance, Quantum, DNA Computing; Data Science (Data Science Techniques and Algorithms); Machine Learning (Deep Learning and other approaches).

Selected Publications (Total: 89, h-Index 05, citations: 77):

• H. Huo, S. Lin, Q. Yu, Y. Zhang, V. Stojkovic, A MapReduce-based algorithm for motif search, 2012 International Workshop on High Performance Data Intensive Computing, Shanghai, China, 2012. 
• H. Huo, Z. Zhaoa, V. Stojkovic, L. Liu, Optimizing genetic algorithm for motif discovery, Mathematical and Computer Modeling, 52 (11-12), 2011-2020, 2010.
• H. Huo, V. Stojkovic, Q. Xie, A quantum-inspired genetic algorithm based on probabilistic coding for multiple sequence alignment, Bioinformatics and Computational Biology, 8 (1), 1-17, 2010.
• H. Huo, X. Wang, V. Stojkovic, Repeats identification using improved suffix trees, Computational Biology and Drug Design, 2 (3), 264-277, 2009.
• H. Huo, V. Stojkovic, Q. Xie, X. Shen, A probabilistic coding based quantum genetic algorithm for multiple sequence alignment, 7th Annual International Conference on Computational Systems Bioinformatics, Stanford University, Stanford, CA, 2008.
• H. Huo, V. Stojkovic, A suffix tree construction algorithm for DNA sequences, IEEE 7th International Symposium on BioInformatics & BioEngineering, Harvard School of Medicine, Harvard University, Boston, MA, 2007.
• V. Stojkovic, H. Huo, A permutation generation DNA-based algorithm - An example of a DNA computing killer application, Scientific and Practical Computing, 1 (1), 16-29, 2007. Reprinted in Вестник Тамбовского университета. Серия: Естественные и технические науки, Вестник, 11 (4), 2006.